go-annotation

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PTN000252522 not always GO:1901006 | ubiquinone-6 biosynthetic process

1

* **PTHR ID & PTN node:** coq11 | ↑is_a GO:1901006 | ubiquinone-6 biosynthetic process | IBA with PTN000252522 , S000004281 * **Sequences with problematic annotation (ID + gene/protein name):** https://www.pombase.org/gene/SPCC1840.09...

ValWood

* **PTHR ID & PTN node:** - | GO:0005794 | Golgi apparatus | IBA with PTN000081884 , locus:2014779 , locus:2090930 * **Sequences with problematic annotation (ID + gene/protein name):** All...

ValWood

Review annotations to GO:0042393 histone binding & children

1

With @colinlog we would like to move these terms under GO:0140566 histone reader activity. See https://github.com/geneontology/go-ontology/issues/27427 This is to check whether existing annotations are consistent with this. GO:0042393 histone binding...

pgaudet

Review annotations to catabolite repression of transcription

2

GO:0000433 carbon catabolite repression of transcription from RNA polymerase II promoter by glucose GO:0000437 carbon catabolite repression of transcription from RNA polymerase II promoter GO:0001081 nitrogen catabolite repression of transcription...

pgaudet

Final tasks for migration to GPAD/GPI 2.0

2

Hi everyone, These are the tasks needed to finalize the switch to emitting GPAD/GAF2.0. (I tentatively assigned people but not 100% about the assignments): - [ ] @LiNiMGI to add...

pgaudet

InterPro:IPR007230 FP

3

* **InterPro ID / label** InterPro:IPR007230 * **Example sequences with problematic annotation (ID + gene/protein name):** https://www.pombase.org/gene/SPAC2C4.09 * **Description of issue** false positive protein family hit:

ValWood

Review annotations to GO:0004121 cystathionine beta-lyase activity

4

Dear all, The proposal has been made to obsolete (with replaced_by) GO:0004121 cystathionine beta-lyase activity GO:0050271 S-alkylcysteine lyase activity see https://github.com/geneontology/go-ontology/issues/27410 Experimental annotations that need to be reviewed are here:...

raymond91125

IPR033904 farnesyltranstransferase activity (GO:0004311)

1

* **InterPro ID / label** [IPR033904](http://www.ebi.ac.uk/interpro/entry/IPR033904) * **Example sequences with problematic annotation (ID + gene/protein name):** https://www.pombase.org/gene/SPBC646.05c erg9 * **Description of issue** erg9 is farnesyl-diphosphate farnesyltransferase activity (GO:0004310) farnesyltranstransferase activity...

ValWood

IPR002225 3-beta-hydroxy-delta5-steroid dehydrogenase activity

1

* **InterPro ID / label** HI, could you have a look at this mapping and see where it comes from? I could not detect a source annotation (at least in...

ValWood

PTN000432120 fatty acid beta-oxidation

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* **PTHR ID & PTN node:** erg10 is annotated to beta-oxidation [GO:0006635](https://www.pombase.org/term/GO:0006635) [fatty acid beta-oxidation](https://www.pombase.org/term/GO:0006635) [IBA](http://wiki.geneontology.org/index.php/Inferred_from_Biological_aspect_of_Ancestor_(IBA)) with [FBgn0025352](http://flybase.org/reports/FBgn0025352.html) , [P55084](https://www.uniprot.org/uniprot/P55084) , [620513](https://rgd.mcw.edu/rgdweb/search/search.html?term=620513) , [PTN000432120](http://www.pantherdb.org/panther/lookupId.jsp?id=PTN000432120) , [620482](https://rgd.mcw.edu/rgdweb/search/search.html?term=620482) * **Sequences with problematic...

ValWood