training-material

training-material copied to clipboard

"Merge GROMACS topologies" tool is not found

1

I am trying to run the High Throughput Molecular Dynamics and Analysis tutorial (https://training.galaxyproject.org/training-material/topics/computational-chemistry/tutorials/htmd-analysis/tutorial.html). But the tool "Merge Gromacs topologies" is nowhere to be found. I am using the usegalaxy.eu...

biotemon

Music compare tutorial-WIP

2

The MUSIC tutorial 2.0 begins!

nomadscientist

Tutorial Feedback

2500

This issue will collect all feedback submitted via the feedback form at the end of each tutorial ---- Results have been [aggregated](https://nbviewer.jupyter.org/github/bebatut/galaxy-training-material-stats/blob/master/src/analyze_feedback.ipynb) and [pro/cons per tutorial](https://github.com/bebatut/galaxy-training-material-stats/tree/master/results)

shiltemann

Issues running GTN website locally on Mac

2

Hi, I was having issues with `make serve` and ended up doing a fresh clone of this repo. But when running `make create-env` (as [here](https://training.galaxyproject.org/training-material/topics/contributing/tutorials/running-jekyll/tutorial.html)) I get the error ```...

mblue9

Updating ENA upload tutorial

1

This PR will make the tutorials fit for all sample types and include how to do an assembly submission.

bedroesb

[WIP] Genome assembly quality control

2

Starting to work on a genome assembly quality control course.

alexcorm

Update An introduction to get started in genome assembly and annotation

3

Main changes: - [x] Added definitions for most of the terms used for genome assembly (contigs, scaffolds, etc.) - [x] Addition of the main file formats related to the assembly...

alexcorm

Ideas to improve the slide decks - Add taxonomy explanation - Add tree of life - Add explanation of the concept of community profile - Add more real use cases...

bebatut

I taught the metatranscriptomics tutorial last week. Here are some ideas to improve it 1. Change inputs data 1. To get more diversity to show 2. Use >=2 datasets 2....

bebatut

The reverse fastqsanger file seems to be not completely uploaded. Path: Libraries/GTN - Material/Metagenomics/Metatranscriptomics analysis using microbiome RNA-seq data/DOI: 10.5281/zenodo.3362849 File: https://zenodo.org/api/files/9659a01c-495d-4f41-ae8a-f6e4a9ed7b6c/T1A_reverse.fastqsanger one improvement may be: Have the MetaPhlAn output...

teresa-m