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Tool Shed repositories maintained by the Intergalactic Utilities Commission
Hello! This is an automated update of the following tool: **tools/microsatbed**. I created this PR because I think the tool's main dependency is out of date, i.e. there is a...
Hello! This is an automated update of the following tool: **tools/lastz**. I created this PR because I think the tool's main dependency is out of date, i.e. there is a...
Hello! This is an automated update of the following tool: **tools/ancombc**. I created this PR because I think the tool's main dependency is out of date, i.e. there is a...
FOR CONTRIBUTOR: * [X] I have read the [CONTRIBUTING.md](https://github.com/galaxyproject/tools-iuc/blob/master/CONTRIBUTING.md) document and this tool is appropriate for the tools-iuc repo. * [X] License permits unrestricted use (educational + commercial) * [X]...
FOR CONTRIBUTOR: * [x] I have read the [CONTRIBUTING.md](https://github.com/galaxyproject/tools-iuc/blob/master/CONTRIBUTING.md) document and this tool is appropriate for the tools-iuc repo. * [x] License permits unrestricted use (educational + commercial) * [...
Quick fix to https://github.com/galaxyproject/tools-iuc/issues/7043 - This PR does NOT export `--outSAMtype`. This patch should still keep the existing functionality of the tool. It adds an extra boolean param `use_samtools_sort` which...
**Describe the bug** When testing BRC-Analytics.org functionality and trying to run the "Single-Cell RNA-seq Preprocessing: 10X Genomics CellPlex Multiplexed Samples" workflow (https://iwc.galaxyproject.org/workflow/fastq-to-matrix-10x-scrna-seq-fastq-to-matrix-10x-cellplex/) it failed on 7th step of the linked...
Back in 2011 Dan Blankenberg wrote a set of tools for manipulation of multiple alignment format ([MAF](https://genome.ucsc.edu/FAQ/FAQformat.html#format5)) https://doi.org/10.1093/bioinformatics/btr398. However, these are fairly slow and outdated. UCSC is maintaining much faster...
TODO: - [ ] check if `fasta.bz2` really works and if so add auto compressed datatype to Galaxy - [ ] yes: https://github.com/galaxyproject/galaxy/pull/20496 FOR CONTRIBUTOR: * [x] I have read...
FOR CONTRIBUTOR: * [X] I have read the [CONTRIBUTING.md](https://github.com/galaxyproject/tools-iuc/blob/master/CONTRIBUTING.md) document and this tool is appropriate for the tools-iuc repo. * [ ] License permits unrestricted use (educational + commercial) *...
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Tool Shed repositories maintained by the Intergalactic Utilities Commission