tools-iuc

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Gallus gallus Species request

1

Hi there, is it possible to add Gallus gallus (Chicken) to this tool ? https://github.com/galaxyproject/tools-iuc/blob/0617f25cbfdca61240f16b85ae21f3cd46b1a44e/tools/annotatemyids/annotateMyIDs.xml#L12 bioconductor-org.Gg.eg.db Thanks

mthang

spades: also use version suffix

2

like all other `*spades*` tools FOR CONTRIBUTOR: * [x] - I have read the [CONTRIBUTING.md](https://github.com/galaxyproject/tools-iuc/blob/master/CONTRIBUTING.md) document and this tool is appropriate for the tools-iuc repo. * [x] - License permits...

bernt-matthias

Add DRAM data manager and set db locations tools

10

FOR CONTRIBUTOR: * [x] - I have read the [CONTRIBUTING.md](https://github.com/galaxyproject/tools-iuc/blob/master/CONTRIBUTING.md) document and this tool is appropriate for the tools-iuc repo. * [x] - License permits unrestricted use (educational + commercial)...

gregvonkuster

Tool request: AGAT

1

From the original repository: https://github.com/NBISweden/AGAT > AGAT has the power to check, fix, pad missing information (features/attributes) of any kind of GTF and GFF to create complete, sorted and standardised...

gallardoalba

sansa: fix tests

4

size of bcf output changed when the container was updated to quay.io/biocontainers/sansa:0.0.8--h4a2b439_2 so I added delta FOR CONTRIBUTOR: * [x] - I have read the [CONTRIBUTING.md](https://github.com/galaxyproject/tools-iuc/blob/master/CONTRIBUTING.md) document and this tool...

bernt-matthias

yahs: bioconda version bump, add `--no-mem-check`

2

FOR CONTRIBUTOR: * [x] - I have read the [CONTRIBUTING.md](https://github.com/galaxyproject/tools-iuc/blob/master/CONTRIBUTING.md) document and this tool is appropriate for the tools-iuc repo. * [x] - License permits unrestricted use (educational + commercial)...

abueg

FOR CONTRIBUTOR: * [X] - I have read the [CONTRIBUTING.md](https://github.com/galaxyproject/tools-iuc/blob/master/CONTRIBUTING.md) document and this tool is appropriate for the tools-iuc repo. * [X] - License permits unrestricted use (educational + commercial)...

bebatut

Spades fixes

2

f37ce4136944e04dc14952bbfdca489ceda88d7d fixes current CI failure Instead of 879ce2ee31c993faf0183f27d6d13bb1458c1e20 we could also define the `operation_mode` parameter in all tools? FOR CONTRIBUTOR: * [x] - I have read the [CONTRIBUTING.md](https://github.com/galaxyproject/tools-iuc/blob/master/CONTRIBUTING.md) document and...

bernt-matthias

kma: bump

5

CI is currently failing due to a core dump that happens if 2 slots are used seems to be fixed in a newer version new version seems to have quite...

bernt-matthias

[FastQC](https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastqc) is a very widely used tool in Galaxy. In almost all cases, the only parameter that is completed is the "Raw read data from current history" one. The other...

pvanheus