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Published 20 hours ago • verified publisher icon galaxyproject

STARSolo add --outBAMsortingBinsN an add a param to force samtools sort

Open pavanvidem opened this issue 5 months ago • 1 comments

Quick fix to https://github.com/galaxyproject/tools-iuc/issues/7043

  • This PR does NOT export --outSAMtype. This patch should still keep the existing functionality of the tool. It adds an extra boolean param use_samtools_sort which forces --outSAMtype BAM Unsorted and uses samtools sort to sort the BAM file.
  • It also exposes --outBAMsortingBinsN and --winAnchorMultimapNmax params which already exist in STAR.

pavanvidem avatar Jun 13 '25 23:06 pavanvidem