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Cryptic errors when CNMFE params are incompatible

9

Troubleshooting mescore CI and ran into this, reproduced on CNMFE demo nb by setting `gSig = (10, 10)` and `gSiz = (41, 41)`, everything else is the same. These params...

kushalkolar

Fix `subidx` to enable computing the NoRMCorre template frame from subset of movie frames

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# Description Hi team CaImAn! I'm Ludovic Bellier, a Senior Computational Research Scientist at Inscopix, a Bruker company. First, thank you so much for making available to the community such...

ludovicbellier

Discovered during Discussion #1178 and related to problems with loading avi that was fixed in PR #1161. Saving avi doesn't work in Windows (strangely, this functionality is in `timeseries.py`). It...

EricThomson

nb=0

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# Description Enable to run CNMF without background components (nb=0) for cases when the background has already been removed in a pre-processing step using other means. Fixes #1068. (and a...

j-friedrich

Issues with manually seeding CNMF-E

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1. Operating System (Linux, MacOS, Windows): Windows 11 Pro 2. Hardware type (x86, ARM..) and RAM: x64, 128 GB 3. Python Version (e.g. 3.9): 3.10.11 4. Caiman version (e.g. 1.9.12):...

wmsheer

CNMF_Fit Error: Index Out of Bound

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CNMF_Fit Index Out of Bound Your setup: 1. Google Colab 2. 2CPU 12.7GB RAM 3. Python Version 3.10.12: 4. Caiman version 1.9.15: 5. Which demo exhibits the problem (if applicable):...

anlo5007

Do you need to downsample the video for calculating the correlation image, if you downsampled using ssub,tsub ??

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Your setup: 1. Operating System (Linux, MacOS, Windows): Windows 2. Hardware type (x86, ARM..) and RAM: x86 RAM:64GB 3. Python Version (e.g. 3.9): 3.10.8 4. Caiman version (e.g. 1.9.12):1.9.15 5....

bashsyr

Create notebook showing how to work with NWB format

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We currently have a py module showing how to work with NWB. It would be good to put this in a notebook and explain things a bit more: this is...

EricThomson

Proposal: Implement lazy computing arrays for CNMF outputs

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Visualization of the reconstructed movie `A * C`, reconstruted background `b * f`, and residuals `Y - (A * C) - (b * f)` are extremely useful for various things...

kushalkolar

I didn't realize until #1110 that `p` is defined twice in the parameters object, first as a `preprocess` value and second as a `temporal` value (it takes the same default...

EricThomson