calcium-imaging topic
CaImAn
Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.
CaImAn-MATLAB
Complete Matlab pipeline for large scale calcium imaging data analysis
NoRMCorre
Matlab routines for online non-rigid motion correction of calcium imaging data
ciatah
CIAtah (pronounced cheetah): a software package for calcium imaging analysis of one- and two-photon imaging datasets. Documentation: https://git.io/ciatah_docs. Formerly known as calciumImagingAnalysi...
MESmerize
Platform for Calcium Imaging analysis. DEPRECATED.
Cascade
Calibrated inference of spiking from calcium ΔF/F data using deep networks
imaging_tools
A table containing imaging analysis tools for biology, with a focus on calcium imaging.
deep-calcium
Fast, Simple Calcium Imaging Segmentation with Fully Convolutional Networks (https://arxiv.org/abs/1707.06314)
flow_registration
Flow-Registration toolbox for 2P motion compensation
SamuROI
SamuROI - Structured analysis of multiple user-defined ROIs, an open source Python-based analysis environment for imaging data.