CaImAn

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Ideas about storage engine

2

Hi Pat, it was great to meet you a few weeks ago at the workshop! I had some ideas about the storage engine, this is just brainstorming. I don't know...

kushalkolar

error when use caiman_gui.py after running demo_pipeline.py

2

For better support, please use the template below to submit your issue. When your issue gets resolved please remember to close it. Sometimes errors while running CNMF occur during parallel...

J0eky

Error with save_memmap

2

For better support, please use the template below to submit your issue. When your issue gets resolved please remember to close it. Sometimes errors while running CNMF occur during parallel...

fatihdinc

Can't install caimanmanager.py in macOS

13

For better support, please use the template below to submit your issue. When your issue gets resolved please remember to close it. Sometimes errors while running CNMF occur during parallel...

shunnnli

Unit tests fail to run due to problem with nose

4

For better support, please use the template below to submit your issue. When your issue gets resolved please remember to close it. Sometimes errors while running CNMF occur during parallel...

GBarnum

Save results to a user given output directory

10

# Description The changes made in this PR allows `cnmf.fit_file` method 1) to save the results in a user given output directory and 2) to return resultant `motion correction` object,...

tdincer

import error

10

import error caused by panel 0.12.6, which is the conda default. This issue was fixed 3 days ago with the release of 0.12.7, which is available on pypi ```python ---------------------------------------------------------------------------...

bendichter

Set align_flag=True yet correlation templates appear misaligned after register_multisession()

8

Hi @epnev thanks for your response to my previous issue. i did set the align_flag to True but it does not seem to help, unfortunately. maybe i am missing something....

akatav

- **If you're not reporting an error, type your message below** Hi, I extracted my trace (estimate.C) very nicely. However, the dff traces (estimate.F_dff) showed negative baseline for some traces,...

jorareshuaiwang

Repository contains large, binary, files

4

The repository is quite large (689MB), resulting in longer wait times for operations, slow cloning, and unnecessary disk usage (this propagates down the pipeline, for example, into the resulting docker...

orpinchasov