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Published 20 hours ago • verified publisher icon flatironinstitute
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Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.

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Fixes infinite values in SNR

6 comment

# Description SNR_comp sometimes contains `inf` values, probably due to some "bad" components having a trace at 0 except for one event. One problem is that it [breaks Mesmerize viz'...

pseudomanu avatar pseudomanu

Kernel dying during motion correction

17 comment

Your setup: 1. Operating System: Ubuntu 22.04.4 2. Hardware type (x86, ARM..) and RAM: Intel® Core™ i7-14700K × 28, 64GiB ram 3. Python Version (e.g. 3.9): 3.9 4. Caiman version...

Mraymon5 avatar Mraymon5

map_async causing issue when doing CNMF using ipyparallel

5 comment

Your setup: 1. Operating System (Linux, MacOS, Windows): Linux 2. Hardware type (x86, ARM..) and RAM: x86, 128 GB 3. Python Version (e.g. 3.9): 3.11.8 4. Caiman version (e.g. 1.9.12):...

ethanbb avatar ethanbb

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verified publisher icon flatironinstitute

Metadata

Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.

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