HiCBrowser
HiCBrowser copied to clipboard
move to .yaml for config?
Current config (.ini) file has it's own format, while yaml is a popular and easy to use format. Plus I am not sure if current config allows a hierarchy in the dictionary keys obtained after parsing. If we have a hierarchy of keys we can merge the gene config and browser config file into one and then we require only one config at browser startup.
For example:
gene_view:
boundaries_bed:
file: /path/to/file
title: TADs
color: red
genes:
file: /data/test/hicBrowser/GRCm38_genes2.bed
title: genes
color: darkblue
region_view:
hic_file:
file: /data/test/hicBrowser/mF1216_merged_10k.h5
title: mF1216
colormap: RdYlBu_r
depth: 1000000
bigwig:
file: /data/test/hicBrowser/H3k4me3.bw
title: H3K4me3