GeneTonic

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Making standalone Desktop app from GeneTonic

5

Hi all, Not so much an issue, but a heads-up that I am experimenting with making a standalone desktop app from GeneTonic using "Electron". People have used this approach to...

markdunning

pandoc-citeproc is not available!

3

When I try the example code below, I got this error "Error in .check_pandoc(ignore_pandoc) : pandoc-citeproc is not available!". ``` library("GeneTonic") library("macrophage") happy_hour(dds = dds_macrophage, res_de = res_de, res_enrich =...

sbbmu

error with enrichment_map()

6

Hi there, I am writing because I keep finding an error while trying to produce an `enrichment_map`. When I call the enrichment_map like this: ``` emg

lucolotto

How to best share output with collaborators?

1

Hi, I just saw your publication in [BMC Bioinformatics](https://doi.org/10.1186/s12859-021-04461-5) on `GeneTonic`, and I would like to say thanks for developing such nice project! I am playing now with the sample...

guidohooiveld

How to deal with NA data for non model species?

5

Hi Federico, Thank you for this really nice and helpful package. It is really useful. I used it for agronomical species (pig and bovine). I encountered a problem when trying...

cagenet

gs_horizon

3

Hi Federico, I would like to know if the gs_horizon is meant to compare enrichment analyses resulting from independent DEG analyses. In my case I am performing three different pairwise...

lucius81

Associate annotation information - bg_ids NULL

2

Hi Federico, thanks for your app which can really make my work a lot easier! For the first time I am approaching RNAseq data analysis and I am adapting my...

Macdot3

"get_aggrscores" function produces "NAs"

2

Dear Federico, I want to apply "GeneTonic" to my dataset. When I used the "get_aggrscores," it returned "NAs" without generating error messages. I have attempted to debug the code but...

anitalakatos

error with gs_scores()

7

Hello! I am having issues creating the heatmap that comes with the gs_scoresheat() function and this is because when I run gs_scores() I get the error: Error in colMeans(thisset_zs) :...

DaniBlumstein

Genetonic unable to install

4

Hi, I have used the package before and love it but this was on a different computer. I am struggling to install the package because of this error: Error: object...

fishmatt