Ethan Blackwood
Ethan Blackwood
@katonage ah ok, I did make some changes to call `resolve` earlier on inputted paths, thinking it would be better to use the canonical form wherever possible. I do see...
OK thanks. When I get a chance I'll add a test for this and try to make the subprocess backend work with paths with spaces.
@katonage Can you check that it works now? You should also be able to use it without the junction, if you want to. Edit: forgot to say I added a...
Good point - and it sounds like this is a concern whether sbxreader was just recommended in the docs or included as a dependency and used for loading (which would...
Ooh yeah that's a bit aggressive, but I guess an easy fix is to just raise an error in the except block instead (and not require cv2 as a package...
@pgunn while I have no particular allegiance to sbxreader (I don't know the author), I'd encourage you to take a look at the code - it's only about 400 lines,...
Ah I didn't register that you were talking about converting and saving as a new file instead of reading the sbx file directly. Agree that could be a good option...
@kushalkolar I was just referring to the fact that it defines this `sbx_memmap` class that overrides the `__getitem__` function to subtract values from `UINTMAX` when reading. It is pretty straightforward....
@pgunn I think multi-plane acquisition is pretty common for Scanbox users - it's a prominent feature for the microscope and software. If this is less of a focus for caiman,...
@kushalkolar yes (rather, 2^16-1). Don't ask me why.