Ethan Blackwood
Ethan Blackwood
Ah, I think you also have to set `is3D` to true in your params['main'].
I agree, reduce number of processes by setting the `MESMERIZE_N_PROCESSES` environment variable. That way it will not try to process as many chunks at a time and will use less...
Oh interesting, I'm guessing I missed this because I only tried rigid 3d mcorr. Can take a look later today.
Yeah, sorry, the 3D mcorr PR had a bug which wasn't caught since I didn't add tests for both the rigid and piecewise cases. Can you change line 115 of...
Glad you're making progress! I believe this error is because you need to provide gSig as a 3-element list for 3D CNMF. The same is true for rf and stride...
I'm not sure, I haven't run into that one - you should try debugging it. It looks like at least one of the patch runs is giving an S of...
Oh I just ran into something related to this because a parameter with the value `None` is saving as `b'NoneType'` rather than `'NoneType'` and not being converted back to `None`...
Although actually looking at that PR #1305, if I'm modifying `recursively_load_dict_contents_from_group` anyway maybe it would make sense to just convert any bytes objects to strings there?
OK, I agree converting all the bytes arrays to strings would not work actually. Looking closer, I now see that it's specifically lists of strings or objects that can't be...
Sorry I was wrong - I forgot that all strings are getting loaded as `bytes`, whether or not they're attributes. However they're mostly converted to strings in `recursively_load_dict_contents_from_group`, except for...