Ethan Blackwood

@hmaarrfk this approach should work if you have tensorflow 2.15 or newer installed, I believe. You have to install the corresponding version of tf-keras (conda should find the right version...

I could be wrong but I don't think this is intentional...`local_correlations_movie_offline` (in base CaImAn, not mesmerize-core) does not behave correctly if the window size is less than the number of...

Yeah to add to this, sorry it was unclear, the "window" has nothing to do with X and Y so you don't have to truncate your movie or do anything...

Yes mesmerize-core (but not -viz) should support 3D motion correction and CNMF, as long as you are using CaImAn version 1.11.2 or later. Note that there are a few parameters...

I've never run into that error, unfortunately. I looked through the code a bit and it seems like with border_nan = 'copy', it would be unlikely for the template to...

This seems not specific to mesmerize-core...are you able to install anything? For example can you run `mamba create -n numpy -c conda-forge numpy`?

Hi @rajlakshmi-sawale, is it failing at the local correlations step? If so, #300 is meant to address this, but it hasn't been merged yet.

OK I just merged that PR; can you try again after installing from the master branch? You will also need caiman version 1.11.2 or later.

Yup, that looks normal, it ran into an error while running but it didn't tell you exactly what it is. What does it show if you run `print(df.iloc[-1, :].outputs['traceback'])`?

Oh ok you might need to use a different index than -1. If you just print the df you should be able to see which row corresponds to the failed...