Elmar Pruesse

Results 91 issues of Elmar Pruesse

Occasionally, recipes tests will succeed with `BIOCONDA INFO Nothing to be done.` If this happens on both Linux and MacOS, it's a fail. The linter should check if at least...

Linting

Simply comparing the `master` to the `HEAD` branch as is done with `bioconda-utils ... --git-range HEAD` is incorrect for PRs from forks. If a user creates a feature branch in...

bug

From https://github.com/bioconda/bioconda-recipes/issues/1860 > check the size of an package - max size package? Should we have a maximum package size? ping @bgruening - this was your comment, is it still...

Linting
Build System
Test-Pipeline

Verify that `LDFLAGS`, `CPPFLAGS`, etc are not overwritten (accidentally). For legit use cases, we could either add a lint-skip, or have some code words in the `build.sh` that allow it....

Linting

See https://github.com/bioconda/bioconda-recipes/pull/14066 generated: ``` https://github.com//bioconda/bioconda-recipes/tree/bump/blast/recipesblast ``` correct: ``` https://github.com/bioconda/bioconda-recipes/tree/bump/blast/recipes/blast ```

Autobump

We definitely have too many issues in `bioconda-recipes`, and they are a mess. How about: - adding issue templates and labels: - `new package request` - `bug in package` -...

Edit: this is pretty much the same stuff as in #107 and #163 --- Currently, the mulled tests differ from the way `conda-build` executes the tests significantly, making it hard...

Test-Pipeline

TLDR: `with tempfile.TemporaryDirectory()` does not force delete but fails on permission denied. I've got a recipe (`megahit` bioconda/bioconda-recipes#5877) failing the mulled-test because of a test result file (`final.contigs.fa`) that can't...

bug
Test-Pipeline

must not be longer than 250ish - seems to fail silently in some cases