Elmar Pruesse
Elmar Pruesse
The LCA classifier has obvious shortcomings as it does not take into account the spread in a search result.
It would be nice to be able to weight gaps at the edges differently than in the middle. MUSCLE e.g. weights them at half the cost by default (IRRC). This...
There does not currently seem to be a good way to override config parameters for testing. Assume you have e.g. a Shiny app which records uploads in a storage folder....
Using an issue template for package specific bugs, we should be able to have the bot figure out which package the issue is referencing and ping the maintainer(s) of the...
The docs are currently generated with a guessed feedstock name - `conda-forge/-feedstock`. This is incorrect in many cases. Back then, no viable alternative existed. However, we now have conda-forge/feedstock-outputs which...
Currently, below fragment aborts build if the branch is not up to date with master on certain files: https://github.com/bioconda/bioconda-recipes/blob/232e99747a668355fb2c65217a1418e7d59dd137/.circleci/setup.sh#L23 By turning this into a lint, we can have it pre-checked...
Several of our recipes nicely do some actual testing with real data, rather than just calling `--help`. Our repo is already pretty heavy, however, and every test case adds to...
see https://github.com/bioconda/bioconda-recipes/pull/15795
`cf-auto-tick` runs every hour here: https://circleci.com/gh/regro/circle_worker It would be possible to do w/o pinning checks (to avoid time consuming `api.render` calls). It could exclude bioconductor, in theory. Although having the...