Elmar Pruesse

Results 91 issues of Elmar Pruesse

See https://github.com/bioconda/bioconda-recipes/commit/5678b3539072781efecd30bd0960db61f1f2dd40 by https://github.com/bioconda/bioconda-recipes/pull/15334 The merge added commits that were not relevant to the recipe. Need to filter commits to those actually changing the recipe.

Bot

I just ran ``` mulled-build build circexplorer2=2.3.6--py_0 --involucro-path `which involucro` --channels conda-forge,https://53580-42372094-gh.circle-artifacts.com/0/tmp/artifacts/packages,bioconda,defaults ``` to see check how big those containers are. Turns out they are massive. It took several minutes,...

The jobs for this repo are using the (empty) Circleci "context" org-global. The context has an `all-members` setting on it, so it is denied for non-members. Meaning non-members PRs will...

Got lost during my redesign. Need to add that.

Docs

GPL requires us to make available everything necessary to build a tool for which we provide the binaries. It simply does. That means we must provide all source code as...

Build System

Pro: - block the namespace - have `[email protected]` emails ;-) - **have subdomain(s) for interactive stuff (bot)** Con: - continuous cost ($10-$30 annually) Options: - Elmar just registers it and...

I've seen both ```commandline + where False = ('/home/circleci/project/miniconda/conda-bld/linux-64/one-0.1-0.tar.bz2') ['.cache', 'upload-test-194309b2-0.1-0.tar.bz2', 'repodata.json', 'index.html', 'one-0.1-h1341992_0.tar.bz2', 'repodata.json.bz2', 'repodata2.json'] ``` and ```commandline + where False = ('/home/circleci/project/miniconda/conda-bld/linux-64/one-0.1-h1341992_0.tar.bz2') ['.cache', 'repodata.json', 'one-0.1-0.tar.bz2', 'index.html', 'repodata.json.bz2', 'upload-test-65be8f0a-0.1-0.tar.bz2',...

We have a mix of Numpy and Google style docstrings. We should probably stick to one. For reference, this is what they look like (example from https://www.sphinx-doc.org/en/master/usage/extensions/napoleon.html): ```python def func(arg1,...

From #454 > base perl packages: move to conda-forge? Who wants to maintain them? We have a large stock of Perl packages not specific to life sciences in any way....

Help Wanted

Calling e.g. `bioconda_utils build` needs to be pointed to the (usually redundant) locations for the recipes folder and the config.yml. - Configure the `recipes_folder` via `config.yml` - Locate the `config.yml`...