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Peak count stat for SPP

2

I can read through it if this is unknown, but does anyone happen to be aware if the SPP peak calling RScript handles responsibility for the task of reporting peak...

vreuter

Attribute reference to 'bigwig' on Sample in chipseq.py

3

In the `chipseq.py` pipeline, there are three usages of `sample.bigwig`, but the `Sample` instance being used does not have a `bigwig` attribute. ``` Target exists: `/sfs/lustre/allocations/shefflab/processed//kipnis_chip/micro/results_pipeline/input_12k/mapped/input_12k.trimmed.bowtie2.filtered.bam.bai` Removed existing flag: /sfs/lustre/allocations/shefflab/processed//kipnis_chip/micro/results_pipeline/input_12k/chipseq_failed.flag...

vreuter