e-manduchi

Clarification on 'Warning: To many values of z. Using 2D polygons'

3

Hello, I'm running baysor v0.6.2 to get a 3D segmentation for CosMx data, where I provide as prior the cells identified by CosMx. I am getting the below warning and...

A reminder to add a warning to make sure that encodings (both phenotype and genotype) are consistent when working with a discovery and a replication dataset.

Thank you for this nice software package! I was looking into the find_markers functionality, which allows to define specified comparisons between two groups of samples via the targets and background...

Hello, we have used wgbstools to convert a cram file from ONT technology to pat/beta files. This was done with wgbstools version 0.2.0. The command utilized was: `wgbstools bam2pat --nanopore...

clarification on apparent discrepancy between snp.vcf and bedmethyl outputs

6

Hello, after running the epi2me human-variation workflow with --mod and --phased, in the snp.vcf file I see this location where the individual is homozygous alternate (C>T). The relevant vcf line...