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Clarification on 'Warning: To many values of z. Using 2D polygons'

Open e-manduchi opened this issue 1 year ago • 3 comments

Hello, I'm running baysor v0.6.2 to get a 3D segmentation for CosMx data, where I provide as prior the cells identified by CosMx. I am getting the below warning and therefore I only get joint polygons. Can you clarify what causes this? Thank you

Info: Estimating boundary polygons [22:40:52] Warning: To many values of z. Using 2D polygons └ Baysor.Processing /home/viktor_petukhov/.julia/dev/Baysor/src/processing/data_processing/boundary_estimation.jl:143

e-manduchi avatar Nov 28 '23 17:11 e-manduchi