dario righelli

icon indicating an email [email protected]

icon location Napoli, Italy icon location Pure computer scientist, biology enthusiast, love thinking into the wild, photo-shooting monsters and sipping India Pale Ale.

Results 46 comments of dario righelli
trafficstars

move `read10xVisium` to `TENxIO`

I totally agree with it @HelenaLC !

`cbind`: unique/duplicated `colnames`are left asis/made unique; `read10xVisium`: keep barcodes as `colData`; `spatialCoords/<-`: `withDimnames` argument

the GHA fail during the tests: ``` ── Error ('test_SpatialExperiment-spatialCoords.R:27'): spatialCoords

Dependency stack

Hi Ludwig, thanks for reporting this, of course, it is something to think about, in particular for the reading function, we are discussing this also in [this thread](https://github.com/Bioconductor/Contributions/issues/2753#issuecomment-1226820298) on one...

Dependency stack

Thanks @LiNk-NY , that's an excellent suggestion, we'll apply this change before the next release :) Dario

How to SpatialFeaturePlot for Aggregated Samples?

Hi @chancharikmitra, thanks for this issue, but unfortunately when we implemented the `read10xVisium`, this kind of data was not around to be tested, so I'm not sure how to load...

Allow additional SpatialImage file extensions

Hi @andrewGhazi, thanks for your issue, I think this would only improve the flexibility of the class, as far as the file type is supported by the `spatialImage` methods. So,...