dario righelli

Hi Alfonso @alfonsosaera, thanks for notifying us about this, but it seems related to the magick library, which seems to have a caching limit on the images it loads. And...

I really don't know, but maybe this stack overflow thread could help https://unix.stackexchange.com/questions/329530/increasing-imagemagick-memory-disk-limits

I don't know what else to suggest... Have you also tried to restart your computer after setting the new limits? This could be a runtime loading at the system start.

maybe you can also try to open an issue or write to the imagemagick authors

Hi @MarcElosua, sorry for the late answer, this is really useful, the only thing that brakes me from including it in the package are the dependencies (we already have a...

Thanks @nilseling and @lmweber, Maybe, we should reconsider our way of thinking on the sample_id(s). I think that `SingleCellExperiment` leaves the choice of the sample names to the user...

I still think that the `spatialCoords` are not needed to be seen as a `reducedDim` data. The `reducedDim`s mostly born for data transformations as PCA, t-SNE and UMAP, which reduce...

Hi Ludwig @lgeistlinger , thanks for this issue, I think this could be really useful, and of course, we have to think about that. As it is right now, we...

@senbaikang could you please resolve the conflicts? If needed Thanks!

it looks good to me, pinging @lmweber and @HelenaLC if they want to add some additional comments, otherwise I'll merge it on my next round across the PRs. Thanks @senbaikang...