Harmony
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dpeerlab
Harmony framework for connecting scRNA-seq data from discrete time points
I use pip install harmonyTS and get the following error: Building wheels for collected packages: fa2 Building wheel for fa2 (setup.py) ... error error: subprocess-exited-with-error × python setup.py bdist_wheel did...
Hi all, I just wanted to point out that this dependency should probably be [`scikit-learn`](https://pypi.org/project/scikit-learn/). https://github.com/dpeerlab/Harmony/blob/eca0771348e7f1b901f95d1a8fc68d95530e830c/setup.py#L34
Dear authors, Thanks for developing harmony! It's really cool! I got this warning "RuntimeWarning: divide by zero encountered in true_divide " when following standard pipeline and the embedding looks a...
Hi, when I run harmony to load the data with: counts = harmony.utils.load_from_csvs(csv_files, sample_names) I found that values greater than 32767 were transformed to negative value. It is noted that...
In my AnnData object, I have a field `adata.obs['day']`, which is categorical, calling `adata.obs['day'].cat.categories` yields ``` Index(['0', '2', '3', '4', '5', '6', '7', '8', '9', '10', '11', '12', '13', '15',...
Harmony has a `n_components` parameter, which, according to the docstring: ```:param pc_components: Minimum number of principal components to use. Specify `None` to use pre-computed components``` That value is used for...