Ding He

Error running 'mmseqs search': Current input: Generic. Allowed input: Index, Nucleotide, Profile, Aminoacid

1

Hi, I tried to run eggnog-mapper/2.1.6 `emapper.py --cpu 0 -m mmseqs --itype metagenome --mmseqs_db ~/ku_00039/people/dinghe/eggNOG_mapperDB/mmseqs -i scaffolds.fasta -o eggNOG_mapper_out` And got this error: > /services/tools/eggnog-mapper/2.1.6/eggnogmapper/bin/mmseqs createdb /home/projects/ku_00039/people/dinghe/working_dr/metagenome_assembly/initial_assembly/metaspades/GAGA-0001/metaspades_out/scaffolds.fasta /home/projects/ku_00039/people/dinghe/working_dr/metagenome_assembly/initial_assembly/metaspades/GAGA-0001/metaspades_out/emappertmp_mmseqs_8juz2x4c/388c9158b65047f38e205e9fdefe8202 --dbtype 2...

Unknown option -d in output_reports.pl

1

Hi, I encountered an issue > [Thu Nov 25 09:32:38 2021] Running: /services/tools/perl/5.20.1/bin/perl /services/tools/metaerg/1.2.3/bin/output_reports.pl -d /home/people/dinghe/ku_00039/people/dinghe/metaergDB/db -g metaerg_out/data/all.gff -o metaerg_out -f metaerg_out/GAGA-0336.fna > 20 use File::Path qw(make_path remove_tree); > Unknown...

bracken-build: ...cat: write error: Broken pipe

2

Hi, I tried several times with the command `bracken-build -d .` in my krakenDB folder and it always ended up with the error message: > >> Selected Options: > kmer...