Error running 'mmseqs search': Current input: Generic. Allowed input: Index, Nucleotide, Profile, Aminoacid

[dinhe878]

Hi,

I tried to run eggnog-mapper/2.1.6 emapper.py --cpu 0 -m mmseqs --itype metagenome --mmseqs_db ~/ku_00039/people/dinghe/eggNOG_mapperDB/mmseqs -i scaffolds.fasta -o eggNOG_mapper_out

And got this error:

/services/tools/eggnog-mapper/2.1.6/eggnogmapper/bin/mmseqs createdb /home/projects/ku_00039/people/dinghe/working_dr/metagenome_assembly/initial_assembly/metaspades/GAGA-0001/metaspades_out/scaffolds.fasta /home/projects/ku_00039/people/dinghe/working_dr/metagenome_assembly/initial_assembly/metaspades/GAGA-0001/metaspades_out/emappertmp_mmseqs_8juz2x4c/388c9158b65047f38e205e9fdefe8202 --dbtype 2 /services/tools/eggnog-mapper/2.1.6/eggnogmapper/bin/mmseqs search -a true /home/projects/ku_00039/people/dinghe/working_dr/metagenome_assembly/initial_assembly/metaspades/GAGA-0001/metaspades_out/emappertmp_mmseqs_8juz2x4c/388c9158b65047f38e205e9fdefe8202 /home/people/dinghe/ku_00039/people/dinghe/eggNOG_mapperDB/mmseqs /home/projects/ku_00039/people/dinghe/working_dr/metagenome_assembly/initial_assembly/metaspades/GAGA-0001/metaspades_out/emappertmp_mmseqs_8juz2x4c/435e6a71ac204e1ca0acfa24bd97ce0d /home/projects/ku_00039/people/dinghe/working_dr/metagenome_assembly/initial_assembly/metaspades/GAGA-0001/metaspades_out/emappertmp_mmseqs_8juz2x4c --start-sens 3 --sens-steps 3 -s 7 --threads 40 Error running 'mmseqs search': Current input: Generic. Allowed input: Index, Nucleotide, Profile, Aminoacid

Any help is appreciated! Thanks! /Ding

[Cantalapiedra]

Hi Ding (@dinhe878),

Sorry for the delay answering.

Did you try with a fraction of your input? (e.g. only the first contig). Or did you check the input file? To try to help I would need to take a look at your input data. I have not been able to reproduce the error myself. You could share it here or send it to [email protected] if you prefer.

Best, Carlos