hotspot3d
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ding-lab
3D hotspot mutation proximity analysis tool
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Hi, I am trying to run the demo code `hotspot3d uppro --measure average --output-dir prep/ --pdb pdb/ --gene-file demo.maf --parallel local --max-processes 6 1>demo.uppro.out 2>demo.uppro.err` and it gave the error:...
Hi, Just following up on the issue I raised under Issue #26. I'm trying to run this mutation file (tab delimited .txt in mutation file format) on your website but...
Dear developer. please check this url http://niulab.scgrid.cn/HotSpot3D/ thanks.
Hi, I had to make a few changes to make it run locally within our organization. My Perl is a bit rusty, so I didn't do a pull request, but...
Hello, I've been trying to run 'sigclus' with the demo data provided as well as the pre-processed proximity files. However - I've run into a number of issues. Firstly, if...
Hello, Can you provide prioritization.tar.gz (syn9704853)? It is much more convent for users to download one file from synapse. And files in syn9705109 have both compressed gz file and uncompressed...
Good afternoon, I don't know if it's already possible to do in your algorithm, but I was thinking if we can cluster by protein feature. For example, output clusters that...
Is it possible to read in a homology modeled structure that is not in RCSB pdb using the `-pdb-file-dir` argument? Thanks
