Damion Dooley
Damion Dooley
Use Case sourced from USDA ARS Glucosinolate profiles differ greatly between different species of cruciferous vegetables, and within varietals too. Can we get a ranking in both cases from some...
Use case sourced from USDA ARS. Selenium distribution in U.S. soil varies significantly by region, and this is reflected in pasta made from wheat. What is the disparity between Italian...
With reference to https://github.com/oborel/obo-relations/issues/607 we need a decision from COB about taking on "[system](https://www.ebi.ac.uk/ols/ontologies/ro/terms?iri=http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FRO_0002577)", which RO seeks to deprecate for lack of modelling support (if there is a group that...
I thought I'd report out about the FoodOn conversion to COB. The main effort is to adapt all the existing MIREOT term importing from other sources to not use BFO...
At moment IAO:0000007 is not showing up in COB.owl Also, COB's "action specification" "has part" subClass axioms look like they were accidentally copied from the "plan specification" class.
Should I assume that if I see a COB term and its COB id that originates from another OBO ontology term, that in adopting COB in an ontology, I can/should...
I'm curious as to the difference between the ambitions of these two tools? Are they converging or going off in different directions? I can't quite tell from the descriptions. (https://github.com/monarch-initiative/curate-gpt)
We want the functionality, tied to LinkML specifications for a field to allow selected terms from one or more ontology branches or cherry-picked terms from them. Beyond this, we also...
This project requires adding a "container" construct to a LinkML schema which DataHarmonizer can read and setup tables for. This translates to creating tables to view/manage records with primary keys...
Code should be made more efficient so that regex is compiled once and reused.