Damion Dooley

Some of the DUO subclasses of investigation terms presupose a biomedical purpose

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For example, all the classes under "biomedical research" mention that process in their definitions, (disease category research, drug development research, genetic research) but disease category research and genetic research could...

A new command-line **[dh-validate.py](https://github.com/cidgoh/DataHarmonizer/blob/master/script/dh-validate.py)** script simplifies the validation of DataHarmonizer-generated csv,tsv,xls,xlsx files. We look forward to feedback on using this below. Basically, the **linkml-validate** command is good for the .json...

Discussion in https://github.com/oborel/obo-relations/pull/742 led to understanding that "in taxon" allows both organism and process/life stage assignment to organism taxon. The "life cycle stage of" synonymy allows "in taxon" to be...

Does taxslim contain a class entry for every NCBITaxon purl?

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It isn't quite clear to me the taxonslim subset has every NCBITaxon taxon class term id in it, or whether the following exclude lots of NCBITaxon taxon class term ids?...

The "guidance" help display text includes a variety of field(slot) information pieces such as "Regular expression validator:" The regex field.pattern is shown to users for e.g. a field value like...

Basically ontofox is bringing this bad annotation in from one of the general_ontofox.txt import sources but I don't know which one, it will require some debugging to block it. It...

Looks like OWL file needs a mesh prefix to enable term ids to be "seen". Ideally replace these with OBO ontology terms: Note: "livestock" is a duplicate term - genepio...

Revising FDA Seafood list synonym markup

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At moment we have two columns in the FDA Seafood list for exact and broad synonyms: When they have the same synonym value this seems to be innacurate. Either both...

Revising FoodOn's wheat hierarchy

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A few national resources exist for documenting wheat cultivars. The Canadian Grains Commission website has [Canadian wheat classes](https://www.grainscanada.gc.ca/en/grain-quality/grain-grading/wheat-classes.html). Others are mentioned on the https://en.wikipedia.org/wiki/Wheat page. An inquiry with the [Wheat...

Horse bean plant and broad bean plant may be duplicates.

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Likely need to fix synonyms at least.