Daniel Dimitrov

Hi @johan-gson, Indeed, there are some interactions missing in the mouse data, very likely as their orthologues were missing from the mapping reference (homologene), that we used. I plan to...

Hi @johan-gson, sorry for the delay, but I finally managed to implement orthology conversion that I'm happy with. Note the `min_evidence` and `one_to_many` parameters, as depending on how strict you...

Hi @xflicsu, I implemented parallel processing for all permutation methods and will be possible from next update. re GPU-enabled computation: this might be a bit down the line, but it...

Hi @SimonDMurray, Currently, the CellPhoneDB accessible via LIANA will be CellPhoneDBv2, as while it's imported via OmniPath, the database in LIANA+ is versioned independently. If you wish to use CellPhoneDBv4...

Hi @SimonDMurray, A bit delayed but I was checking the new CPDB resource and one can get it the following way: ``` import pandas as pd import numpy as np...

Hi @feriobrahmana, Yes, you can feed any database to liana, to see the format you can just do `liana.resource.select_resource()`. This will return a dataframe, with the columns that it expects....

PS. It seems to me that the authors of the resource, took some resources (specifically LRdb as they have a huge overlap and this one is not curated) at face...

At the very least we should exclude the interactions the reference of which points to LRdb/SingleCellSignalR and Ramilowski as these are not curated, simply transferred.

Thanks @dnjst, this is helpful to hear. We will soon make the latest version of CPDB5 available via liana (and will be updated on each version). So, that it's also...

Hey @dnjst, Indeed, in a past version I decided not to include supp columns in `rank_aggregate` due to (long-story-short) the way that I used to deal with complexes. I can...