Thomas Down

I've been investigating this today. Things seem to have changed quite a bit since the existing feature/interrupt branch, so rather than trying to get that merging, I've re-implemented the basics....

The "interupt" branch at dasmoth/gorilla-repl is now in a pretty-much usable state. Rather than implementing an evaluation queue, I've added a check to prevent a new evaluation starting while one...

Thanks for looking into this. Yes, you're looking in the right place. The +/-3 thing is because this style of BED is usually being used to represent protein-coding regions. I...

If you're using the trunk version of Biodalliance, then for small numbers of features, you can use the "test-source" store, as per: https://github.com/dasmoth/dalliance/blob/master/test/render-test.html#L146-L151 For a larger number of features, something...

Sorry, I rather lost track of this one :blush: I'll hopefully have time this weekend to take a look. Moritz -- if you get a chance, splitting the "pre-parsed features"...

Just wanted to point out one other alternative: {name: 'Inline BED test', tier_type: 'memstore', payload: 'bed', uri: URL.createObjectURL( new Blob([ ['22 30000000 30010000', '22 30050000 30060000'].join('\n') ]) ) } (It...

The reason you're getting a "bad magic" error is that the Blob constructor doesn't treat arrays of ints as bytes in the way you might hope -- It's actually converting...

Okay, there was a boundary-condition bug which could affect a few very small bigwig files (including yours). Fixed now.

Thanks Ben, sounds like a great project, and some extra encouragement for me to give Julia a try one of these days. If there's anything we can do Biodalliance-side to...

You shouldn't need to run this when installing from npm. However, the npm package is quite old (and was uploaded by a third party). I'm hoping it'll be possible to...