Thomas Down
Thomas Down
(CC @ymen. Thanks to @timjph for initially bringing this to my attention). The new translation code is sometimes generating incorrect (or at least improbable) translations in cases where gene annotation...
Browser.search is only really suitable as a hook for the Browser chrome. A final API should: ``` - Return match data to the caller, rather than triggering immediate browser navigation....
Both for config, and for providing more information about the track. Possibly want two ways of doing this: a generic way to insert some custom DOM in the track editor,...
Currently we're rather over-eager to fetch reference sequence. Conversely, it's relatively easy to get false negatives (e.g. bug fixed today relating to configs with overlays).
...as an alternative route for getting liftOver mappings into the system. https://genome.ucsc.edu/FAQ/FAQformat#format9.4
Should be able to do both a small chromosome overview (as was implemented in Dalliance 0.7 and earlier), and an overview of _all_ chromosomes. Does it make sense to share...
There's quite a bit of code scattered around to handle canonicalization of chromosome names for the "22" vs. "chr22" case. We should - try to centralize this in one place...
The current BioDAS-heritage stylesheet system is reaching its limits. - Neither the DAS XML syntax nor the Biodalliance-specific "JSON" syntax (which is really just a serialisation of how we represent...
Now seen two independent cases of servers sniffing the headers of BAM files and adding "Content-Encoding: gzip" or similar, causing the browser to uncompress them.