Thomas Down

Am I right in thinking that this is Chrome? I could reproduce in Chrome but not in Firefox. I'm pretty certain there isn't a logic bug in the Dalliance .2bit...

Chrome bug filed: https://code.google.com/p/chromium/issues/detail?id=416895

Well, let's be slightly more specific here: I can draw your test gene structure with the following line of BED data: ``` chrZ 1001 1800 test 1000 - 0 0...

That is an important point regarding the info popups. Probably needs a flag somewhere to say "want unmapped coords in the info popups". I imagine that might also be important...

Yes, I think the coordinate mapping approach is the right way to go. Not entirely sure what's going wrong for @ymen but will take a look ASAP.

Yes, when the mapping stuff was originally done, the assumption was that you'd always have the target genome available. But given some of the things we've discussed lately, being able...

The back-end side of this is done now. Partially mapped features have partialMin and/or partialMax attributes indicating how many bases of the partially-mapped feature have been trimmed.

I can see the advantages of this, but it seems to me like something that you'd want to toggle on and off rather often. Might it make more sense to...

I like the snapping idea. May take a little bit of tuning to make it "sticky enough" without being annoying when you _do_ want to scroll horizontally, but seems well...

This is quite hard to avoid when rendering each bar of the histogram as a separate rectangle on the canvas. The solution is probably to special-case histograms to work more...