Thomas Down

Filtering out cds_start_NF is done now. There's a suitable human gene set at http://www.biodalliance.org/datasets/GRCh37/gencode.v19.annotation.bb -- I'll make that the default for the public browsers as well. But will leave this...

The master branch now has experimental support for bigBeds with explicit exon frames, encoded in the same way as the UCSC browser "genePredExt" tables. There's an example of such a...

Biodalliance should auto-detect these. The format matches the UCSC bigGenePred format: https://genome.ucsc.edu/goldenpath/help/bigGenePred.html

This was a deliberate design decision to try and conserve screen space. Pre-canvas versions of Dalliance (0.7 and earlier) did put labels in a separate column, but we ran into...

@moritzschaefer: the `LABEL` property in the DAS stylesheet is for controlling the labelling of individual features, not tracks. If you are talking about the track labels, have you tried something...

Per the original message, the current Browser.search is fairly specifically a hook for the "genome browser chrome" core, rather than a flexible API for running arbitrary searches. I'm still interested...

Very cool! I'm _slightly_ loathe to add electron as a "general" dependency of the Biodalliance package though, since it's pretty big (119Mb on my machine). How easy would it be...

This sounds like a generally useful feature. I guess there are two major parts: ``` 1) a region-selection mechanism (which we don't have yet, but probably should). 2) a way...

Renaming and bumping this because the export aspect of this is still unresolved, and would, I think, be a useful addition. Some thought about what format(s) to support may be...

There isn't a built in option for this, but if you configure your tracks programatically, you can do this via a plugin. Something like: ```javascript function readDownsampler(featureSets) { const reads...