Ryan Dale
Ryan Dale
@isuruf couple of comments. First, Seurat (`r-seurat`) is [maintained over on conda-forge](https://github.com/conda-forge/r-seurat-feedstock). My best guess would be that's to support Windows users (since bioconda does not build on windows). So...
@althonos in general we do not have resources to run unit tests (see [here](https://bioconda.github.io/contributor/guidelines.html#tests)). In addition, the goal of running tests in the isolated container (mulled-test) is to ensure no...
That makes sense. I guess you are planning on holding off on this recipe until the next release then?
Makes no difference; I was just passing through trying to debug failing tests, but sounds like this is a known issue and you have a plan so I'll move on...
@martin-g thank you for the epic troubleshooting! To make sure I understand this all: the busybox aarch64 container and the x86_64 container disagree in their umasks? And secondarily, you can't...
Hmm, are there data copied in somehow? The build is [running out of space](https://dev.azure.com/bioconda/bioconda-recipes/_build/results?buildId=51566&view=logs&j=e14e69ff-a0ae-55c4-b71d-229b239cfb2f&t=4dddc55b-10bc-50fc-ac68-7ff899b7a030&l=2460) which is strange.
Just to clarify, [unit tests should not be run as part of building bioconda packages](https://bioconda.github.io/contributor/guidelines.html#tests). We don't have the resources to run unit tests on everything. The [check from the...
Thanks for this. I'm worried about the performance hit though. Typically, the string splitting is what takes the most time when creating a db, and python regular expressions are notoriously...
Thanks for the detailed description! Part of the challenge with gffutils is covering all the corner cases simultaneously...your solution will work for this GFF, but I think it may fail...
Thanks for reporting. Agreed, it would be nice to have this but I do not have the bandwidth to work on this at the moment. Happy to review pull requests...