Ryan Dale

Results 126 comments of Ryan Dale

Thanks. No worries, take your time -- it's easy enough to ensure no blank lines in VCFs used as input.

Tons of errors in the log about clobbering paths. E.g., ``` ClobberWarning: This transaction has incompatible packages due to a shared path. packages: defaults/linux-64::tensorflow-base-1.9.0-gpu_py36h6ecc378_0, conda-forge/linux-64::tensorflow-1.9.0-py36_0 path: 'lib/python3.6/site-packages/tensorflow/include/Eigen/src/Eigenvalues/ComplexSchur.h' ``` So it...

@jayramr looking at the upstream repo, it is not installed as typical python package despite being split into modules. It will not be straightforward to package. One possible way of...

@DrYak the old version of the package will stay in the conda channel, and typically we only keep the most recent recipe in this repo. If the older version of...

@nickjcroucher just to make sure I understand, the goal here is to modify the user's home directory upon activating an environment? My initial reaction to that is that it doesn't...

Based on the [post-link docs](https://docs.conda.io/projects/conda-build/en/latest/resources/link-scripts.html), you can write to `$PREFIX/.messages.txt` to show a message. So: - create and install a script that will modify `$HOME` - in `build.sh`, append to...

@bioconda-bot please fetch artifacts

Whoops, no need to check for artifacts since it's still blacklisted. Do you know if other parts of the package (aside from the genomedata-load-data) work with the patch that prevents...

@kstangline see https://github.com/bioconda/bioconda-recipes/pull/36797 for fixes and notes. TL;DR:`bioconductor-gagedata=2.32.0=r41hdfd78af_0` will need to be changed to `bioconductor-gagedata=2.32.0=r41hdfd78af_1` or `bioconductor-gagedata=2.32.0` in the yaml. Can you give that a try?

@tobsecret if you click on the "View more details on Azure Pipelines" link, it'll take you to the full log. [Here](https://dev.azure.com/bioconda/bioconda-recipes/_build/results?buildId=20849&view=logs&j=eb1ca712-fec5-5d93-deb0-40983fe61f2f&t=c9ebc308-e058-58af-a4f4-866fa7649dbb&l=30) is the relevant line, where the lint messages start...