Ryan Dale

GFF and GTF file manipulation and interconversion

daler

some example matplotlibrc files, and a script display their effects

daler

Simple interface to BioMart (Python -> rpy2 -> R/BioConductor's biomaRt)

daler

Manage the visualization of large amounts of other people's [often messy] genomics data

daler

Framework for integrated analysis and plotting of ChIP/RIP/RNA/*-seq data

daler

example ruffus pipeline

daler

Python wrapper -- and more -- for BEDTools (bioinformatics tools for "genome arithmetic")

daler

experimenting with the best way to push sphinx-generated docs to gh-pages

daler

create, manage, and upload track hubs for use in the UCSC genome browser

daler

Helpers for working with ChromHMM (http://compbio.mit.edu/ChromHMM/)

daler