Ryan Dale

On this file, I'm able to do this without errors: ``` python import pybedtools for i in pybedtools.BedTool('shortcis.txt'): print(i.chrom, i.start, i.stop) ``` Are you able to do the same on...

Hmm, seems fine. The `u` is just Python 2 telling you it's unicode. If you convert to BED do you get the same error? It could be the lack of...

Nope, it can't make a db from bed files. Would you send a minimal complete example of the data and code that reproduces the problem? I'm going to need to...

Are you sure you can reproduce the error with these files? The h3k27ac.txt one doesn't have the same chromosome names as htscis.txt, and there's a lot of extra stuff in...

Thanks for pointing this out. This happens because the example BED file (saved as `b_test.bed`) is BED4 format, and pybedtools allocates memory for a 4-item list. One solution is to...

For this year's update: I submitted the request to reinstate parallelism on Friday, and an hour ago I got a reply from Azure saying the request is "completed", but I'm...

Docs over at https://github.com/bioconda/bioconda-docs/pull/16 are mostly ready (thanks @bgruening @Yikun @martin-g for the reviews). This is the last item on the checklist above, but I think there might be a...

Update.... > 2. Make circleci jobs consistent. Use machine executor for both regular builds and bulk > 3. Make containers during regular builds and store as artifacts so they are...

Updates: > 1. Build images consistently Looking into this some more, the containers are built so differently that I think it will take a substantial documentation and cleanup effort to...

Updates: I mocked up the master branch by editing branch names in circleci config. I created https://github.com/bioconda/bioconda-recipes/pull/44462 and merged it into https://github.com/bioconda/bioconda-recipes/pull/44467 to simulate the merging process. This avoids having...