Charles Tapley Hoyt

I already map several FlyBase gene types to SO terms: https://github.com/pyobo/pyobo/blob/dc9ad7d2aa11d42b82bca94a2be282370d4c9fcc/src/pyobo/sources/flybase.py#L100-L119 The following haven't yet got mappings: - mt_LSU_rRNA_gene - mt_SSU_rRNA_gene - C_D_box_snoRNA_gene - H_ACA_box_snoRNA_gene - C_D_box_scaRNA_gene - hpRNA_gene -...

This helps with massively broken OBO files that don't use CURIEs but rather only LUIDs. Not ideal, just a demo.

Annotate genes in HGNC with SO terms

4

Either find or create terms for all HGNC gene locus types that can be used to annotate all genes in HGNC: - [x] Fragile site https://github.com/The-Sequence-Ontology/SO-Ontologies/issues/301 - [x] RNA, Y...

from ROR message thread https://github.com/paulmillar/PIC-to-ROR/

Improve pattern curation and add regex checking to resolver

1

This should have been obvious since the patterns are available for most. Regex checking isn't strictly necessary if the id mapping is loaded, but can provide more information to users....

Combine a query like ```sparql prefix rdf: prefix owl: SELECT distinct ?s ?label WHERE { GRAPH { ?s rdf:type owl:Class . ?s rdfs:label ?label FILTER strstarts(str(?s), "http://semanticscience.org/resource/CHEMINF_") } } ```...

- [ICD-O](https://apps.who.int/classifications/apps/icd/ClassificationDownload/DLArea/ICD-O-3_CSV-metadata.zip) - [ICD 10](https://apps.who.int/classifications/apps/icd/ClassificationDownload/DLArea/icd102019enMeta.zip)

Since we can grab all of these and map them, we can answer this question How many human genes have similar named genes in other organisms (or direct homologs) but...