Charles Tapley Hoyt

It's not so good to load entire ontologies, but other code in other packages relies on this. Add some unit test mock magic to allow the `pyobo.get_name`, `pyobo.ground` and other...

Will make generating Ooh-na-na much richer to know the version to which each name corresponds

Everything is in this pack: http://www.orphadata.org/data/RD-CODE/Packs/Orphanet_Nomenclature_Pack_EN.zip - Mapping to ICD-10 at https://github.com/orphanet-rare-diseases-issues/RD-CODE/tree/master/ORPHA_ICD10_mapping

Especially Entrez and PubChem

http://bigg.ucsd.edu/data_access ## Metabolite ([bigg.metabolite](https://registry.identifiers.org/registry/bigg.metabolite)) http://bigg.ucsd.edu/static/namespace/bigg_models_metabolites.txt ## Reaction ([bigg.reaction](https://registry.identifiers.org/registry/bigg.reaction#!)) http://bigg.ucsd.edu/static/namespace/bigg_models_reactions.txt ## Compartment ([bigg.compartment](https://registry.identifiers.org/registry/bigg.compartment#!)) ??

MetaNetX

2

[MetaNetX](https://www.metanetx.org/mnxdoc/mnxref.html) is a database and web service for the construction of metabolic networks. It has three notable nomenclatures for: 1. Chemicals 2. Reactions 3. Subcellular Compartments It would be great...

Get BioGRID xrefs

1

https://downloads.thebiogrid.org/File/BioGRID/Release-Archive/BIOGRID-3.5.184/BIOGRID-IDENTIFIERS-3.5.184.tab.zip ```python VERSION = '3.5.183' BASE_URL = 'https://downloads.thebiogrid.org/Download/BioGRID/Release-Archive' URL = f'{BASE_URL}/BIOGRID-{VERSION}/BIOGRID-IDENTIFIERS-{VERSION}.tab.zip' ```

WikiData property: https://www.wikidata.org/wiki/Property:P594 Already done in Bio2BEL.

- [ ] Add notes to cookie cutter template about sphinx vs Napoleon vs numpy docstrings formats - [ ] Add more information in table of contents on how to...

This repo does some analysis, but wasn't able to post their data on github (https://github.com/ky66/ROBIN#data). The data is on figshare at https://figshare.com/ndownloader/files/36477873, seemingly this could be a simple wrapper around...