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Published 20 hours ago • verified publisher icon biopragmatics

Annotate genes in FlyBase with SO terms

Open cthoyt opened this issue 1 year ago • 0 comments

I already map several FlyBase gene types to SO terms: https://github.com/pyobo/pyobo/blob/dc9ad7d2aa11d42b82bca94a2be282370d4c9fcc/src/pyobo/sources/flybase.py#L100-L119

The following haven't yet got mappings:

  • mt_LSU_rRNA_gene
  • mt_SSU_rRNA_gene
  • C_D_box_snoRNA_gene
  • H_ACA_box_snoRNA_gene
  • C_D_box_scaRNA_gene
  • hpRNA_gene
  • cytosolic_rRNA_5S_gene
  • RNA_7SK_gene
  • cytosolic_rRNA_18S_gene
  • cytosolic_rRNA_5_8S_gene
  • H_ACA_box_scaRNA_gene
  • cytosolic_rRNA_2S_gene
  • cytosolic_rRNA_28S_gene
  • sbRNA_gene

This is a similar effort to https://github.com/pyobo/pyobo/issues/118

cthoyt avatar Jan 04 '24 13:01 cthoyt