Charles Tapley Hoyt
Charles Tapley Hoyt
@davidlmobley I was thinking of how I would go about cleaning up/exploring the data in this repo now that there's a little infrastructure, but it occurred to me that this...
Typically, people expect DOIs, PubMed identifiers (PMIDs), or arXiv identifiers for publications. The bibliography in this repository is a bit old school, which means that the provenance information associated with...
There are a few major issues with CSV files: 1. Commas may pop up inside data, which means cells need to be quoted 1. There are many different flavors of...
Right now it's pretty hard to figure out what's actually in the database - it would be great to have an explanation of what each column is in the README...
I would like to consume NCIT's OBO edition as OBO Graph JSON - it would be great if this were added to the build
Hi, would you please provide an OBO export of this ontology? Thanks!
- What other operations do people commonly want to do with the entire ChEMBL database/SDF file that would be good to wrap (including loading other files released by ChEMBL)? -...
@egonw are there any bulk SMILES, InChI, or SDF loading operations in bacting that are exposed by pybacting that would be nice to wrap inside this library for full loading...
This PR performs QC on the curated URI prefixes in https://github.com/linkml/prefixmaps/blob/main/src/prefixmaps/data/bioportal.curated.yaml and ingests a high-quality/non-redundant subset of them. This still requires curation to add in important context for each
Closes #490 This is some old code, but will be useful to follow up on since it fits in with the statement of work for the CZI grant