Charles Tapley Hoyt
Charles Tapley Hoyt
In https://github.com/perma-id/w3id.org/pull/3508, I will get a permalink for the Biomappings SSSOM TSV file: https://w3id.org/biopragmatics/biomappings/sssom/biomappings.sssom.tsv. I want to do one or both of the following: 1. Have the appropriate configuration somewhere...
This PR imports the 3,960 mappings between molecules in DrugBank and DrugCentral that were predicted through exact string matches, manually reviewed by @caufieldjh, and stored in http://kg-hub-public-data.s3.amazonaws.com/frozen_incoming_data/drug-id-maps-0.2.sssom.tsv. Some notes: 1....
1. klas generated processed statement dump, check frequency of chebi terms and mesh terms 2. go in and curate those that actually show up first find what occurs in INDRA...
uniprot-mesh proteins (suppleemnt in mehs) created by determinisic way based on static rules likely to produce very confident, 1-1 mappings associated some kind of tag/annotation with documentation to allow downstream...
gilda bio-id benchmark - we needed to do curation like UBERON-MeSH ones that showed up really frequently, made a big difference in the benchmark by doing highest priority
This PR adds a script for identifying orthologous pathways in Reactome based on lexical matching. All pathway identifiers have the form R-{SPECIES CODE}-{PATHWAY CODE}, so any two species' pathways can...
- [ ] Map MGI gene identifiers to UniProt - [ ] Identify other organisms available from MeSH
Given that the Biomappings website identifies and lists [incomplete triangles](https://biopragmatics.github.io/biomappings/triangles/), it might make sense to create a new curation interface that just focuses on resolving these
There are a few benefits: 1. The SSSOM format uses CURIEs exclusively, so there won't be any confusion about identifier style ambiguity 2. We can use SSSOM tooling instead of...