Charles Tapley Hoyt
Charles Tapley Hoyt
From the Pathway Ontology OBO, it seems that there are xrefs to SMP (the small molecule pathway database) but neither using the appropriate OBO context. First, they appear as CURIEs...
There are some great polar graph algorithms for this kind of stuff! 1. Look for n-cycles with all equivalent but one not-equivalent relation 2. Triangles and other cliques mean the...
Building on #1, a good README should have step-by-step instructions for a minimal example on how to use the software
How can this code be installed locally? Ideally that can be done using `pip`, either through PyPI or via GitHub
It would be useful to upload this package to PyPI so other packages can list it as a requirement. In the meantime, ss of PEP 509 (I think) you can...
It would be nice to make this code pip installable and to use entrypoints to make a vanity script through which the scripts can be run. I'd be happy to...
Anything you import into `__init__.py` becomes available at the package level, so now it would be possible to do `from word_cloud import WordCloud`
There are 14 ChEBI entries that incorrectly referencing the `drugbank` namespace. Entries in DrugBank follow the pattern `^DB\d{5}$`. These entries are pointing to salts, which don't appear in that namespace....
By their name, it's possible to infer that ChEBI entries like [nicotinic acetylcholine receptor agonist](http://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:47958) have a relation to some sort of external protein or class of proteins. In this...
A web service I want to include a rdflib-endpoint instance in is built in Flask, can you add documentation on how to mount a `rdflib_endpoint.SparqlEndpoint` to an existing `flask.Flask` that...