C. Titus Brown
C. Titus Brown
Right now it's just @luizirber but maybe @bluegenes should be on there now?
what I did for [r0.12.1](https://github.com/sourmash-bio/sourmash/releases/tag/r0.12.1), based on [r0.12.0](https://github.com/sourmash-bio/sourmash/releases/tag/r0.12.0) ``` # generate log of PRs git log --oneline r0.12.0..latest src/core | cut -d\ -f2- > /tmp/out.txt #edited src/core/CHANGELOG.md appropriately # tagged,...
``` mprof run sourmash gather SRR606249.k31.sig.gz /group/ctbrowngrp/sourmash-db/gtdb-rs207/gtdb-rs207.genomic-reps.dna.k31.zip --save-prefetch-csv p2.csv -o g2.csv mprof plot -o ~/transfer/gather.png ``` shows three phases: * initial load; * prefetch; * gather 
starting draft here: https://hackmd.io/ad6v9eeaRqy8GKMQZp7A4w?view copy pasted below # a quick manifest example Take a simple sig in a file: ``` % ls example.sig.gz ``` Let's look at it in more...
per [@LilyAnderssonLee review](https://github.com/pyOpenSci/software-submission/issues/129#issuecomment-1838233643) >Refactoring duplicate code into helper functions to avoid redundancy and improve maintainability.
our reviews are in over at https://github.com/pyOpenSci/software-submission/issues/129!!! this is a placeholder that will (eventually) contain a checklist for addressing all of the reviewer comments.
Release candidate testing: - [x] Command line tests pass for a release candidate - [x] All eight release candidate wheels are built Releasing to PyPI: - [x] RC tag(s)s deleted...
per https://sourmash.readthedocs.io/en/latest/developer.html, * it's not clear that the "general instructions" come after/are an ALTERNATIVE to the mamba install stuff * the mamba install stuff doesn't actually install tox, although tox-conda...
thinking through some of the gather issues revealed/discussed in https://github.com/sourmash-bio/sourmash/issues/2950, and also the bug in https://github.com/sourmash-bio/sourmash/issues/2825, and also worrying that branchwater fastgather/fastmultigather don't handle adaptive downsampling properly, I'm wondering if...