C. Titus Brown
C. Titus Brown
viz all the cool things you can do, and fast!, with branchwater plugin - https://github.com/sourmash-bio/sourmash_plugin_branchwater/issues/169 - would be good to point power users at this.
IMO. code is messy, is not as well tested as `gather`, it was never that much faster than gather, and doesn't support picklists. our goal should be to continue to...
through complicated magic referenced [here](https://github.com/sourmash-bio/sourmash/issues/1622) and [here](https://github.com/sourmash-bio/sourmash/issues/1577#issuecomment-880602271), the Rust-based sourmash code can be compiled into web assembly (wasm) and then used to sketch FASTA/FASTQ in the browser. This is 😎...
it uses python 3.9 ;)
https://github.com/sourmash-bio/pyo3_branchwater some benchmarks: https://github.com/sourmash-bio/pyo3_branchwater/issues/10
#3031 is embarrasing, and we should add tests that avoid it. This could be made into a repeatable quest for new contributors.
it's incredibly fragile... ...and others think so too ;) https://hynek.me/articles/ditch-codecov-python/
https://github.com/powturbo/TurboPFor-Integer-Compression highlighted in Tinted De Bruijn graphs tweet thread, https://twitter.com/BQPMalfoy/status/1760326415784747271?t=kqI2Ys_QXpvCTKDmGRUOOg ref https://github.com/spacegraphcats/spacegraphcats/issues/516
right now it's not really specified anywhere 😆 ``` ident,superkingdom,phylum,class,order,family,genus,species GCF_014075335.1,d__Bacteria,p__Proteobacteria,c__Gammaproteobacteria,o__Enterobacterales,f__Enterobacteriaceae,g__Escherichia,s__Escherichia flexneri GCF_000578955.1,d__Bacteria,p__Firmicutes,c__Bacilli,o__Staphylococcales,f__Staphylococcaceae,g__Staphylococcus,s__Staphylococcus aureus ```
In #1493, we added `sourmash_args.SaveSignaturesToLocation(...)` to support a wide variety of output formats. In #1891, we are adding the ability to read manifest files, as output by `sourmash sig manifest`....