C. Titus Brown
C. Titus Brown
sphinx_rtd_theme has been fixed, per https://github.com/readthedocs/sphinx_rtd_theme/issues/127; might be good to revisit https://github.com/sourmash-bio/sourmash/issues/2139#issuecomment-1193153207 and do some experimenting, once a new sphinx_rtd_theme is released. The specific change that was introduced to fix...
**Is your feature request related to a problem? Please describe.** We [recently ran into a problem in genome-grist](https://github.com/dib-lab/genome-grist/issues/237#issuecomment-1336256533) where a pinned version of snakemake (v6.12.3) broke because the tabulate version...
https://twitter.com/BQPMalfoy/status/1760326415784747271?t=kqI2Ys_QXpvCTKDmGRUOOg https://www.biorxiv.org/content/10.1101/2024.02.15.580442v1
Extremely-fast construction and querying of compacted and colored de Bruijn graphs with GGCAT https://www.biorxiv.org/content/10.1101/2022.10.24.513174v1
There's quite a bit of interest https://github.com/sourmash-bio/sourmash/issues/2816 https://github.com/sourmash-bio/sourmash/issues/3070 https://github.com/sourmash-bio/sourmash/issues/3089 in using doing contig-level/long-read gather and (maybe) taxonomy assignment for contigs/long reads. Here's a short example that uses `fastmultigather` to do...
v4.8.5 was the last one uploaded. not sure what's going on. https://zenodo.org/search?q=sourmash&l=list&p=1&s=10&sort=newest
not sure why - the CI hasn't changed since v4.8.6 - but should go look at `fnkr/github-action-ghr@v1` running in the maturin wheels action. related issues: * https://github.com/sourmash-bio/sourmash/pull/3090
in https://github.com/sourmash-bio/sourmash/pull/3084, we updated cibuildwheel to 2.17.0, which looks like it has a bunch of nifty new features and config changes. explore!
(copied from https://github.com/sourmash-bio/sourmash/issues/461#issuecomment-1993390314) Hi Titus @ctb , I don't know whether I could ask the following questions related to this issue, anyway.... We've used your tool to quantify the abundance...
in collection.rs, we have: ``` let manifest = Manifest::from_reader(storage.load("SOURMASH-MANIFEST.csv")?.as_slice())?; ``` which results in an error that looks like this, ``` Error: Path not found: SOURMASH-MANIFEST.csv ``` when a zipfile doesn't...