C. Titus Brown
C. Titus Brown
It would be nice to transfer information from issues into the sourmash docs. Maybe a lightweight way to do this is with an FAQ? [#908 Should I expect identical result...
> in two FracMinHashes with the same scaled values, any k-mer that is (a) > present in both data sets and (b) is kept in one sketch is (c) guaranteed...
over on twitter, ben woodcroft [asked](https://twitter.com/wwood/status/1562255085463171073) if/when sourmash would report the relative abundance of each genome, taking into account shared k-mers. this is hard, and we've thought a fair bit...
from a slack thread, a few links and tips we could add to docs for new sourmash developers - @mr-eyes says: >Alternatively, if the edit is minor, you can suggest...
@luizirber and I chatted a bit over slack about the new [mastiff](https://github.com/sourmash-bio/mastiff) service he built, which allows ~realtime search of the SRA public metagenomes (!!) This, in turn, enables other...
with the addition of `compare --distance` in #2225, it turns out that `sourmash plot` doesn't like distance matrices 🤔 . In particular, scipy linkage doesn't like it - with #2225,...
while working on https://github.com/sourmash-bio/sourmash/pull/2225 and making sure that `plot` will work with both similarity and distance matrices, I ran a few comparisons with the 64 genomes from podar-ref (sequences [here](https://osf.io/vbhy5/download...
Fixes #1341 ## Checklist - [ ] Is it mergeable? - [ ] `make test` Did it pass the tests? - [ ] `make coverage` Is the new code covered?...
per @ccbaumler https://github.com/sourmash-bio/sourmash/pull/2222#discussion_r949418693 we don't actually document max containment anywhere 😱 I can't think of a particularly good place to put it, either. We may need a new section; could...
the search and gather functionality is now sufficiently well laid out for us to make it work over remote connections in a nice standard way...