C. Titus Brown
C. Titus Brown
'twould be nice to have the threshold at which matches were generated output from `sourmash gather`. https://github.com/sourmash-bio/sourmash/issues/1818 also involves adjusting sourmash gather output, so we could do both at one...
You can reach many of the sourmash developers over at [the new sourmash-bio community gitter channel](https://gitter.im/sourmash-bio/community) - hope to see you there! You can come ask for help using sourmash,...
@kescobo ran into some out-of-memory errors when trying to do `sourmash compare` on 100k genomes, and we became curious about memory usage 😆 kevin: >One thing you could do is,...
revisiting a (5 yro :) conversation about interoperability https://github.com/marbl/Mash/issues/27 after some discussions on slack with @kescobo on [µbioinfo slack](https://microbial-bioinfo.slack.com). See also a motivating question about implementations in BioJulia https://github.com/BioJulia/BioSequences.jl/issues/243 and...
it is not there currently: https://sourmash.readthedocs.io/en/latest/command-line.html#sourmash-compare-compare-many-signatures but it does exist. ht kevin bonham!
right now the minimum metagenome cover algorithm in `sourmash gather` builds the smallest set of genomes that covers all of the known hashes. however, those genomes may overlap. this means...
but it should! I guess I missed it in https://github.com/sourmash-bio/sourmash/pull/2195. per https://github.com/dib-lab/genome-grist/pull/213
The following code snippet is a command-line script that will change the scaled for a signature without changing any of the hashes (unless some would no longer fit within the...
per https://github.com/sourmash-bio/sourmash/issues/1033#issuecomment-648929650, we are following [NEP 29](https://numpy.org/neps/nep-0029-deprecation_policy.html) for what versions of Python we support. @ccbaumler adjusted our install docs to match the Python versions we support, which no longer includes...
asked on slack by Jonathan Rondeau-Leclaire - >I am trying to understand the scaled argument in sourmash gather. Can you point me to what I need to read to understand...