C. Titus Brown
C. Titus Brown
In https://github.com/sourmash-bio/sourmash/issues/1771, I found a nice benchmark that helped showcase some ~simple performance problems with `gather` and `prefetch`, since fixed in https://github.com/sourmash-bio/sourmash/pull/2123 and https://github.com/sourmash-bio/sourmash/pull/2132. For the moment, the dominant performance...
https://github.com/sourmash-bio/sourmash/pull/2005 adds ANI thresholding to `tax genome`, and for sourmash v5 we should make this the default.
(this can be a bit of a running issue until we get around to fixing them ;) The introduction of ANI output in [v4.4.0](https://github.com/sourmash-bio/sourmash/releases/tag/v4.4.0) is pretty awesome, with lots of...
For testing and interoperability reasons, I'd like to be able to force mash to always use the 64 bit hash function. Would it be possible to add a command line...
Hi all, first some background: it seems like [sourmash](https://github.com/dib-lab/sourmash) is going to be a thing; I'm building it into a metagenomics data exploration tool, and it's already integrated into [https://github.com/dib-lab/khmer/](khmer)...
If the added recipe is not under `recipes/`, the linter incorrectly complains that the example recipe has been deleted. --- ## details Over in https://github.com/conda-forge/staged-recipes/pull/12983, I got a lint error,...
Please see https://github.com/ngs-docs/ggg-shell-genomics-ws - I got this lesson working in binder just fine! Click launch binder, then go to New... Terminal... and follow through lesson! This could be a good...
``` apt-get update apt-get -y install python-pip python-dev python-numpy git ruby \ liburi-escape-xs-perl emboss liburi-perl pip install -U setuptools ```
I'm interested in seeing Markdown and ReST native viewers in the console, for teaching purposes. Are there any plans already in motion? Where would I look to find them? I...
Hello! genomepy looks super interesting! I was trying to install it with conda and got: ``` % mamba create -y -n genomepy genomepy Looking for: ['genomepy'] bioconda/osx-arm64 No change conda-forge/osx-arm64...