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cortex-lab
phy: interactive visualization and manual spike sorting of large-scale ephys data
Hi, I'm wondering if it is possible to add quality metrics as a new field/label in the cluster view. For example, if I computed some metrics for each unit and...
When opening Phy's template-gui with some data exported from Kilosort, the FeatureView and TemplateFeatureView windows cannot be opened; the console log prints `Could not create view FeatureView.` on startup and...
Hi phy team, I was going to do the soring with phy on my ''klustaed'' spikes but found whenever I chose the clusters, all the ''view'' windows are blank (see...
Hello, I'm trying to open a dataset in phy and keep getting the error below. I'm running Ubuntu 20.04.4 LTS. I've tried reinstalling ```PyQtWebEngine```but it did not solve the problem....
This PR addresses and may resolve #1143, resolve #1151, resolve #1156, resolve #1159, and resolve #1165. As @FranciscoNaveros and others have [observed](https://github.com/cortex-lab/phy/issues/1159#issue-1239068482), the issue of blank cluster views occurs when...
The error stands : "15:03:52.934 [W] gui:671 Could not create view FeatureView" and "15:03:54.478 [W] gui:671 Could not create view TemplateFeatureView". Resetting with --clear-state or --clear-cache does not solve the...
ClusterView and SimilarityView views open entirely blank and unresponsive; issues exiting Phy window
I installed phy following the installation instructions with python 3.10.5 on Windows 10. I was attempting to use it with data produced by Kilosort, but ran into issues. I then...
clicking on menu list on widgets in phy don't produce a drop-down window of functions to choose from (e.g. number of waveforms included). Using Mac OS Mojave 10.14.6 setup using...
Hello, I want to create a plugin that calculates the isolation distance (IsoD) and likelihood ratio (Lratio) of a cluster. I know how to calculate these values for features on...
I have been using Kilosort3 on Neuropixel recordings, and downloaded the last version of phy. I need to do the phy extract-waveforms command to be able to look at the...
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phy: interactive visualization and manual spike sorting of large-scale ephys data